SMTL ID : 5j56.1

RTA-V1C7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 6 residues within 4Å: Chain A: Y.92, Y.116, T.117, F.118, Y.155 Ligands: CL.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.92

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 1 residues within 4Å: Chain A: L.162 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.162 ACY.3: 5 residues within 4Å: Chain A: P.144, E.147, R.167, S.168, I.171 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.147 Water bridges: A:E.147, A:R.167, A:R.198, A:R.198 Salt bridges: A:R.167

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: H.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.95

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: T.14, A.15, N.65, H.66, E.146 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Y.81, R.181 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: F.118, A.119, F.120 Ligands: PG4.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Structural Analysis of Single Domain Antibodies Bound to a Second Neutralizing Hot Spot on Ricin Toxin's Enzymatic Subunit. J. Biol. Chem. (2017)

Release Date

2016-12-07

Peptides

Ricin: A
VHH single chain antibody V1C7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ricin

VHH single chain antibody V1C7

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