SMTL ID : 5j57.1

V5E1-RTA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: S.239, K.240 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: E.128, L.134, R.135, E.136, I.206 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.123, Y.124, D.125 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: N.11, F.25 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: G.14, G.15, S.16, S.84 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: T.207, Q.232, Q.234, K.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.207, A:Q.232, A:K.240 EDO.6: 3 residues within 4Å: Chain A: G.158, G.159, Q.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.161 EDO.7: 5 residues within 4Å: Chain A: E.147, T.164, R.167, S.168, I.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.167 Water bridges: A:E.147, A:A.151, A:R.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Structural Analysis of Single Domain Antibodies Bound to a Second Neutralizing Hot Spot on Ricin Toxin's Enzymatic Subunit. J. Biol. Chem. (2017)

Release Date

2016-12-07

Peptides

Ricin: A
VHH single chain antibody V5E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ricin

VHH single chain antibody V5E1

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