SMTL ID : 5j67.1 (3 other biounits)

Structure of Astrotactin-2, a conserved vertebrate-specific and perforin-like membrane protein involved in neuronal development

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 14 residues within 4Å: Chain A: N.16, H.136, K.260, M.264, Y.267, W.268, D.277, D.278, W.279, A.326, I.327, E.381, K.548 Ligands: I3P.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.381

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: K.1, N.3, Q.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.1

1 x I3P: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE(Non-covalent)

I3P.3: 3 residues within 4Å: Chain A: R.408, W.543 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.543 Salt bridges: A:R.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, T. et al., Structure of astrotactin-2: a conserved vertebrate-specific and perforin-like membrane protein involved in neuronal development. Open Biology (2016)

Release Date

2016-05-25

Peptides

Astrotactin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Astrotactin-2

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