SMTL ID : 5j6a.1

Crystal structure of pyruvate dehydrogenase kinase isoform 2 in complex with inhibitor PS46

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x P46: (3S)-3-amino-4-[4-({2-[(2,4-dihydroxyphenyl)sulfonyl]-2H-isoindol-5-yl}amino)piperidin-1-yl]-4-oxobutanamide(Non-covalent)

P46.1: 13 residues within 4Å: Chain A: L.245, N.248, R.251, A.252, E.255, S.256, E.258, D.283, G.287, V.288, L.296, L.339, T.347 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.251, A:A.252, A:L.296, A:L.339, A:T.347 Hydrogen bonds: A:L.245, A:E.255, A:D.283, A:T.347 Water bridges: A:E.258, A:G.285, A:G.287 P46.2: 13 residues within 4Å: Chain B: L.245, N.248, R.251, A.252, E.255, S.256, E.258, D.283, G.287, V.288, L.296, L.339, T.347 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:R.251, B:A.252, B:L.296, B:L.339, B:T.347 Hydrogen bonds: B:L.245, B:E.255, B:D.283, B:T.347 Water bridges: B:E.258, B:G.285, B:G.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tso, S.C. et al., Development of Dihydroxyphenyl Sulfonylisoindoline Derivatives as Liver-Targeting Pyruvate Dehydrogenase Kinase Inhibitors. J. Med. Chem. (2017)

Release Date

2017-01-25

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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