SMTL ID : 5j71.1

Crystal structure of pyruvate dehydrogenase kinase isoform 2 in complex with inhibitor PS35

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 7 residues within 4Å: Chain A: E.255, S.256, H.257, E.258, S.259, S.260 Ligands: P35.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.255, A:S.256, A:E.258, A:S.259, A:S.259 Water bridges: A:S.256, A:S.256, A:S.260 TLA.3: 7 residues within 4Å: Chain B: E.255, S.256, H.257, E.258, S.259, S.260 Ligands: P35.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.255, B:S.256, B:E.258, B:S.259, B:S.259 Water bridges: B:S.256, B:S.256, B:S.260

2 x P35: 4-({5-[(piperidin-4-yl)amino]-1,3-dihydro-2H-isoindol-2-yl}sulfonyl)benzene-1,3-diol(Non-covalent)

P35.2: 18 residues within 4Å: Chain A: L.245, N.248, A.249, R.251, A.252, E.255, S.256, D.283, G.285, G.287, V.288, L.296, L.323, L.339, S.341, T.347, A.349 Ligands: TLA.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.251, A:A.252, A:E.255, A:L.296, A:T.347 Hydrogen bonds: A:E.255, A:E.255, A:D.283, A:T.347 Water bridges: A:G.287, A:G.287 P35.4: 18 residues within 4Å: Chain B: L.245, N.248, A.249, R.251, A.252, E.255, S.256, D.283, G.285, G.287, V.288, L.296, L.323, L.339, S.341, T.347, A.349 Ligands: TLA.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:R.251, B:A.252, B:E.255, B:L.296, B:T.347 Hydrogen bonds: B:E.255, B:E.255, B:D.283, B:T.347 Water bridges: B:G.287, B:G.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tso, S.C. et al., Development of Dihydroxyphenyl Sulfonylisoindoline Derivatives as Liver-Targeting Pyruvate Dehydrogenase Kinase Inhibitors. J. Med. Chem. (2017)

Release Date

2017-01-25

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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