SMTL ID : 5j7f.2 (1 other biounit)

Structure of MDM2 with low molecular weight inhibitor with aliphatic linker.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 6GG: 4-({6-[(6-chloro-3-{1-[(4-chlorophenyl)methyl]-4-(4-fluorophenyl)-1H-imidazol-5-yl}-1H-indole-2-carbonyl)oxy]hexyl}amino)-4-oxobutanoic acid(Non-covalent)

6GG.1: 18 residues within 4Å: Chain A: V.14, T.16, L.54, F.55, L.57, G.58, I.61, M.62, Y.67, V.93, H.96, I.99, Y.100 Chain B: Y.67, Q.72, V.93, H.96 Ligands: 6GG.2 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.16, A:L.57, A:I.61, A:I.61, A:V.93, B:Y.67, B:V.93 Hydrogen bonds: A:L.54, A:G.58 pi-Stacking: A:H.96 Halogen bonds: A:H.96 6GG.2: 21 residues within 4Å: Chain A: M.62, Y.67, Q.72, V.93, K.94 Chain B: V.14, T.16, L.54, F.55, L.57, G.58, I.61, M.62, Y.67, Q.72, F.86, V.93, H.96, I.99, Y.100 Ligands: 6GG.1 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.16, B:L.54, B:L.57, B:I.61, B:I.61, B:V.93, A:V.93 Hydrogen bonds: B:L.54 pi-Cation interactions: B:H.96 Salt bridges: A:K.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Twarda-Clapa, A. et al., 1,4,5-Trisubstituted Imidazole-Based p53-MDM2/MDMX Antagonists with Aliphatic Linkers for Conjugation with Biological Carriers. J. Med. Chem. (2017)

Release Date

2017-05-17

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

E3 ubiquitin-protein ligase Mdm2

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