SMTL ID : 5j7g.2 (2 other biounits)

Structure of MDM2 with low molecular weight inhibitor with aliphatic linker.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 6GG: 4-({6-[(6-chloro-3-{1-[(4-chlorophenyl)methyl]-4-(4-fluorophenyl)-1H-imidazol-5-yl}-1H-indole-2-carbonyl)oxy]hexyl}amino)-4-oxobutanoic acid(Non-covalent)

6GG.1: 14 residues within 4Å: Chain A: L.38, F.39, L.41, G.42, I.45, M.46, Y.51, Q.56, F.70, F.75, V.77, H.80, I.83, Y.84 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.38, A:L.41, A:I.45, A:I.45, A:V.77, A:I.83 Hydrogen bonds: A:L.38, A:G.42 pi-Stacking: A:H.80 Halogen bonds: A:H.80 6GG.2: 13 residues within 4Å: Chain B: L.38, F.39, L.41, G.42, I.45, M.46, Y.51, Q.56, F.70, V.77, H.80, I.83, Y.84 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.41, B:I.45, B:I.45, B:V.77, B:I.83 Hydrogen bonds: B:L.38, B:G.42 pi-Stacking: B:H.80 Halogen bonds: B:H.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Twarda-Clapa, A. et al., 1,4,5-Trisubstituted Imidazole-Based p53-MDM2/MDMX Antagonists with Aliphatic Linkers for Conjugation with Biological Carriers. J. Med. Chem. (2017)

Release Date

2017-05-17

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

E3 ubiquitin-protein ligase Mdm2

Related Entries With Identical Sequence