SMTL ID : 5j87.1

Discovery of N-(3-(5-((3-acrylamido-4-(morpholine-4-carbonyl)phenyl)amino)-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-2-methylphenyl)-4-(tert-butyl)benzamide (CHMFL-BTK-01) as a Highly Selective Irreversible BTK Kinase Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-tetramer

Ligands

4 x N42: N-[3-(5-{[3-(acryloylamino)-4-(morpholine-4-carbonyl)phenyl]amino}-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-2-methylphenyl]-4-tert-butylbenzamide(Covalent)

N42.1: 21 residues within 4Å: Chain A: L.24, G.27, Q.28, F.29, V.32, A.44, K.46, T.90, E.91, Y.92, M.93, A.94, N.95, G.96, C.97, N.142, L.144, D.155, L.158, S.159, Y.167 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.24, A:F.29, A:V.32, A:V.32, A:Y.92, A:L.158, A:Y.167 Hydrogen bonds: A:M.93, A:C.97 Water bridges: A:G.27, A:R.141, A:D.155 N42.2: 25 residues within 4Å: Chain B: L.24, G.25, T.26, G.27, Q.28, F.29, V.32, A.44, K.46, T.90, E.91, Y.92, M.93, A.94, N.95, G.96, C.97, N.100, N.142, L.144, D.155, L.158, S.159, V.162, Y.167 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.24, B:L.24, B:F.29, B:V.32, B:V.32, B:Y.92, B:D.155, B:V.162 Hydrogen bonds: B:M.93, B:C.97 Water bridges: B:G.27, B:R.141, B:N.142 N42.3: 21 residues within 4Å: Chain C: L.24, G.25, G.27, Q.28, V.32, A.44, K.46, T.90, E.91, Y.92, M.93, N.95, G.96, C.97, N.100, N.142, L.144, D.155, L.158, S.159, Y.167 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:Q.28, C:V.32, C:V.32, C:V.32, C:Y.92, C:L.144, C:L.158 Hydrogen bonds: C:K.46, C:Y.92, C:M.93, C:M.93, C:C.97 Water bridges: C:G.27, C:N.100 N42.4: 22 residues within 4Å: Chain D: L.24, T.26, G.27, Q.28, V.32, A.44, K.46, T.90, E.91, Y.92, M.93, A.94, G.96, C.97, N.100, D.137, N.142, L.144, D.155, L.158, S.159, Y.167 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:L.24, D:L.24, D:Q.28, D:V.32, D:V.32, D:Y.92, D:N.100, D:L.158 Hydrogen bonds: D:M.93, D:M.93, D:C.97 Water bridges: D:L.24, D:L.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, Q. et al., Discovery of N-(3-(5-((3-acrylamido-4-(morpholine-4-carbonyl)phenyl)amino)-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-2-methylphenyl)-4-(tert-butyl)benzamide (CHMFL-BTK-01) as a highly selective irreversible Bruton's tyrosine kinase (BTK) inhibitor. Eur J Med Chem (2017)

Release Date

2017-04-19

Peptides

Tyrosine-protein kinase BTK: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tyrosine-protein kinase BTK