SMTL ID : 5j8o.1

Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x 6GZ: (2R)-1-({3-bromo-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)piperidine-2-carboxylic acid(Non-covalent)

6GZ.1: 18 residues within 4Å: Chain A: I.37, Y.39, Q.49, V.51, V.59, M.98, I.99, S.100, A.104, D.105 Chain B: I.37, Y.39, M.98, I.99, S.100, A.104, D.105, Y.106 11 PLIP interactions: 4 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:I.37, B:A.104, B:Y.106, A:I.37, A:Y.39, A:V.59, A:V.59, A:M.98, A:A.104 pi-Stacking: B:Y.39, A:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zak, K.M. et al., Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). Oncotarget (2016)

Release Date

2016-04-27

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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