SMTL ID : 5j8x.1

CRYSTAL STRUCTURE OF E. COLI PBP5 WITH 2C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x OK3: (4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid(Covalent)

OK3.1: 13 residues within 4Å: Chain A: A.66, S.67, K.70, S.133, N.135, L.176, R.221, T.237, G.238, H.239, T.240, D.241, R.271 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.67, A:S.133, A:N.135, A:T.237, A:H.239, A:H.239, A:H.239 Salt bridges: A:K.236, A:H.239, A:R.271 pi-Stacking: A:H.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brem, J. et al., Structural basis of metallo-beta-lactamase, serine-beta-lactamase and penicillin-binding protein inhibition by cyclic boronates. Nat Commun (2016)

Release Date

2016-08-17

Peptides

D-alanyl-D-alanine carboxypeptidase DacA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-alanyl-D-alanine carboxypeptidase DacA