SMTL ID : 5j8z.1

Human carbonic anhydrase II in complex with ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.96, H.98, E.108, H.121, T.200 Ligands: FC4.3, 6KE.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.96, A:H.98, A:H.121

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: N.64, H.66, A.67, N.69, Q.94, H.96, H.98, T.201 Ligands: FC4.3, 6KE.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.64, A:N.69, A:N.69, A:Q.94 Water bridges: A:T.201

1 x FC4: (2R)-2-{[4-(4-chlorophenyl)-5-cyano-6-oxo-1,6-dihydropyrimidin-2-yl]sulfanyl}-N-(4-sulfamoylphenyl)propanamide(Non-covalent)

FC4.3: 14 residues within 4Å: Chain A: H.96, H.98, H.121, V.123, F.132, G.133, V.144, L.199, T.200, T.201, W.210 Ligands: ZN.1, GOL.2, 6KE.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.132, A:L.199, A:L.199 Hydrogen bonds: A:T.200, A:T.200 Water bridges: A:G.133

1 x 6KE: (2S)-2-{[4-(4-chlorophenyl)-5-cyano-6-oxo-1,6-dihydropyrimidin-2-yl]sulfanyl}-N-(4-sulfamoylphenyl)propanamide(Non-covalent)

6KE.4: 17 residues within 4Å: Chain A: I.93, Q.94, H.96, H.98, H.121, V.123, F.132, G.133, V.144, L.199, T.200, T.201, P.203, W.210 Ligands: ZN.1, GOL.2, FC4.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.123, A:F.132, A:F.132, A:L.199 Hydrogen bonds: A:H.96, A:T.200 Water bridges: A:Q.94, A:G.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vullo, D. et al., Kinetic and X-ray crystallographic investigations of substituted 2-thio-6-oxo-1,6-dihydropyrimidine-benzenesulfonamides acting as carbonic anhydrase inhibitors. Bioorg.Med.Chem. (2016)

Release Date

2016-06-29

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonic anhydrase 2

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