SMTL ID : 5j9f.1 (1 other biounit)

Human GAR transformylase in complex with GAR and (4-{[2-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzoyl)-L-glutamic acid (AGF183)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 13 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, G.88, M.90, I.108, H.109, P.110, G.118, K.171, E.174 Ligands: 83A.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:I.108, A:E.174, A:E.174 Water bridges: A:T.11, A:L.15, A:A.87, A:G.88, A:G.88, A:H.109, A:D.145 Salt bridges: A:K.171

1 x 83A: N-(4-{[2-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)ethyl]amino}benzene-1-carbonyl)-L-glutamic acid(Non-covalent)

83A.2: 18 residues within 4Å: Chain A: R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.92, A:V.144 Hydrogen bonds: A:M.90, A:M.90, A:R.91, A:I.92, A:L.93, A:L.93, A:S.119, A:A.141, A:D.145, A:D.145 Water bridges: A:N.107, A:A.141, A:A.141 Salt bridges: A:R.65, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golani, L.K. et al., Tumor Targeting with Novel 6-Substituted Pyrrolo [2,3-d] Pyrimidine Antifolates with Heteroatom Bridge Substitutions via Cellular Uptake by Folate Receptor alpha and the Proton-Coupled Folate Transporter and Inhibition of de Novo Purine Nucleotide Biosynthesis. J.Med.Chem. (2016)

Release Date

2016-08-10

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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