SMTL ID : 5j9x.1

HSP90 in complex with N-Butyl-5-[4-(2-fluoro-phenyl)-5-oxo-4,5-dihydro-1H-[1,2,4]triazol-3-yl]-2,4-dihydroxy-N-methyl-benzamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 6GC: N-butyl-5-[4-(2-fluorophenyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl]-2,4-dihydroxy-N-methylbenzamide(Non-covalent)

6GC.1: 18 residues within 4Å: Chain A: L.40, N.43, S.44, D.46, A.47, K.50, D.85, I.88, G.89, M.90, L.95, L.99, F.130, Y.131, V.142, W.154, T.176, V.178 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.46, A:L.99 Hydrogen bonds: A:N.43, A:K.50, A:D.85, A:G.89, A:G.89 Water bridges: A:L.40, A:G.87, A:F.130 pi-Cation interactions: A:K.50 6GC.3: 18 residues within 4Å: Chain B: L.40, N.43, S.44, D.46, A.47, K.50, D.85, I.88, G.89, M.90, L.95, L.99, F.130, Y.131, V.142, W.154, T.176, V.178 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:D.46, B:L.99 Hydrogen bonds: B:N.43, B:K.50, B:D.85, B:G.89, B:G.89 Water bridges: B:L.40, B:G.87, B:F.130 pi-Cation interactions: B:K.50

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: H.69, N.71, T.211, F.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.71 pi-Cation interactions: A:H.69 DMS.4: 4 residues within 4Å: Chain B: H.69, N.71, T.211, F.213 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.71 pi-Cation interactions: B:H.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amaral, M. et al., Protein conformational flexibility modulates kinetics and thermodynamics of drug binding. Nat Commun (2017)

Release Date

2017-12-06

Peptides

Heat shock protein HSP 90-alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Heat shock protein HSP 90-alpha

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