SMTL ID : 5ja7.2 (1 other biounit)

Human cathepsin K mutant C25S in complex with the allosteric effector NSC94914

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x 6HM: [([1,1'-biphenyl]-2-yl)methyl]propanedioic acid(Non-covalent)

6HM.1: 7 residues within 4Å: Chain A: R.8, A.9, K.127, K.130, R.131, R.206, N.207 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.8, A:A.9, A:K.127, A:K.130 Hydrogen bonds: A:N.207 Water bridges: A:K.130, A:R.206 Salt bridges: A:K.130, A:K.130, A:R.206 pi-Cation interactions: A:R.8

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: R.16, V.21, T.22, P.23, V.24, Y.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.24

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: N.26, G.193, E.194, N.195 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.26, A:E.194, A:N.195, A:N.195 Water bridges: A:N.26, A:N.26

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 1 residues within 4Å: Chain A: K.184 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.184, A:K.184 Salt bridges: A:K.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Novinec, M. et al., An allosteric site enables fine-tuning of cathepsin K by diverse effectors. FEBS Lett. (2016)

Release Date

2016-11-30

Peptides

Cathepsin K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin K

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