SMTL ID : 5ja8.4 (3 other biounits)

Crystal structure of the HigB2 toxin in complex with Nb2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.52, R.65, K.85 Ligands: PDO.2 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.52, A:R.65, A:K.85

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.2: 7 residues within 4Å: Chain A: K.50, R.65, Y.83, G.84, K.85, N.86 Ligands: PO4.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.50, A:R.65, A:G.84, A:N.86 Water bridges: A:E.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadzi, S. et al., Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a beta-strand sliding mechanism. Nucleic Acids Res. (2017)

Release Date

2017-04-05

Peptides

Toxin HigB-2: A
Nanobody 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Toxin HigB-2

Nanobody 2

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