SMTL ID : 5jad.1

Compound binding to Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2)discovered through fragment screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: E.240 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.240, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.276, F.277, V.305, H.306 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: L.108, S.228, W.253, F.277, H.306 2 PLIP interactions: 2 interactions with chain A pi-Cation interactions: A:W.253, A:W.253

1 x FB2: benzenesulfonamide

FB2.4: 13 residues within 4Å: Chain A: L.62, F.65, G.107, L.108, G.109, A.110, L.114, Y.115, H.227, H.306, Q.307, A.310, F.312 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.65, A:A.110, A:L.114, A:A.310 Hydrogen bonds: A:L.108, A:Y.115, A:Q.307 Water bridges: A:L.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woolford, A.J. et al., Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2) Discovered through X-ray Fragment Screening. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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