SMTL ID : 5jax.1

PKG I's Carboyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with 8-Br-cGMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x 6J7: 2-amino-8-bromo-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-1,9-dihydro-6H-purin-6-one(Non-covalent)

6J7.1: 16 residues within 4Å: Chain A: I.48, V.67, R.69, L.80, R.81, L.83, F.89, G.90, E.91, K.92, A.93, R.100, T.101, A.102, V.104, Y.135 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.81, A:R.81, A:G.90, A:G.90, A:E.91, A:E.91, A:K.92, A:A.93, A:T.101, A:T.101, A:T.101 Salt bridges: A:R.100 pi-Stacking: A:Y.135, A:Y.135 pi-Cation interactions: A:Y.135

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: G.126, D.128 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.126, A:D.128 CA.3: 3 residues within 4Å: Chain A: R.53, D.55, D.98 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.55, A:D.98

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: K.92, A.93, Q.95, E.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.97, A:E.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, J.C. et al., Structural Basis of Analog Specificity in PKG I and II. ACS Chem. Biol. (2017)

Release Date

2017-04-19

Peptides

cGMP-dependent protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-dependent protein kinase 1

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