SMTL ID : 5jbd.1 (1 other biounit)

4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.237, D.243, N.287, N.751 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.237, A:E.237, A:D.243, A:N.287, H2O.5

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: S.525, N.526, G.527, T.528 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.528 Hydrogen bonds: A:N.526, A:G.527 Water bridges: A:S.525 ACT.3: 1 residues within 4Å: Chain A: R.355 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.355

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: L.857, A.858, P.878, T.879 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.858, A:T.879 SO4.5: 2 residues within 4Å: Chain A: I.774, H.775 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.775, A:H.775 Salt bridges: A:H.775

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: D.283, E.321, Y.707, Q.752 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.321, A:Q.752, A:Q.752 Water bridges: A:R.281, A:R.281, A:H.392, A:D.393 GOL.7: 3 residues within 4Å: Chain A: Y.431, N.470, E.478 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.470 GOL.8: 7 residues within 4Å: Chain A: D.213, S.214, N.215, Y.216, N.248, K.839, Y.840 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.214, A:N.215, A:N.215, A:N.248 Water bridges: A:S.214 GOL.9: 3 residues within 4Å: Chain A: K.436, T.437, N.438 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.437, A:T.437, A:N.438, A:N.438

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 3 residues within 4Å: Chain A: W.58, T.150, A.154 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, Y. et al., Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria. Structure (2017)

Release Date

2017-01-18

Peptides

Inactive glucansucrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Inactive glucansucrase

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