SMTL ID : 5jc8.1

Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-tetramer

Ligands

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 4 residues within 4Å: Chain A: A.57, D.60, A.61, E.64 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.57, A:D.60, A:A.61, A:E.64 Water bridges: A:D.60, A:E.64 Salt bridges: A:D.60

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: G.151, A.152, N.194, R.196 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.196, A:R.196 Water bridges: A:K.18, A:K.18, A:D.255, A:D.255, A:D.255 EDO.3: 2 residues within 4Å: Chain A: A.68, A.69 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.44, A:E.44 EDO.4: 3 residues within 4Å: Chain A: L.63, R.67, P.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.67, A:R.67 EDO.5: 3 residues within 4Å: Chain A: E.189, Y.190, K.193 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.189 EDO.8: 4 residues within 4Å: Chain A: D.255, R.258 Chain C: R.243, N.247 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:D.255, C:N.247 Water bridges: C:R.243, C:R.243 EDO.9: 4 residues within 4Å: Chain B: G.151, A.152, N.194, R.196 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.196, B:R.196 Water bridges: B:K.18, B:A.152 EDO.10: 3 residues within 4Å: Chain B: D.55, L.56, A.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.55, B:L.56, B:A.57 EDO.11: 5 residues within 4Å: Chain B: R.243, N.247 Chain D: D.255, E.256, R.258 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:R.243, B:N.247 Water bridges: B:N.247, D:E.256 EDO.12: 4 residues within 4Å: Chain C: G.151, A.152, N.194, R.196 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.196, C:R.196 Water bridges: C:K.18, C:K.18, C:D.255, C:D.255, C:D.255 EDO.14: 5 residues within 4Å: Chain D: G.24, G.26, D.53, D.55, S.58 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.58, D:S.58 Water bridges: D:G.108 EDO.15: 6 residues within 4Å: Chain D: G.108, A.109, P.110, Y.172, K.176, M.209 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.34, D:Y.172, D:Y.172, D:K.176 Water bridges: D:N.106, D:N.106, D:N.106, D:G.108, D:T.207 EDO.16: 4 residues within 4Å: Chain A: W.164 Chain B: V.188 Chain D: R.274, D.276 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Water bridges: B:E.189 Hydrogen bonds: D:R.274 EDO.17: 5 residues within 4Å: Chain D: G.166, A.167, L.226, R.230, R.233 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.166, D:R.230, D:R.233, D:R.233 Water bridges: D:A.167

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain A: C.27, G.33, P.208, M.209 No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.18: 4 residues within 4Å: Chain D: C.27, G.33, P.208, M.209 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conrady, D.G. et al., Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans. to be published

Release Date

2016-05-11

Peptides

Putative short-chain dehydrogenase/reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative short-chain dehydrogenase/reductase