SMTL ID : 5jck.1

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: L.30, G.31, G.32, G.33, V.34, A.35, I.56, S.57, K.58, E.59, R.66, P.67, S.70, K.71, T.112, E.113, I.114, A.140, T.141, G.142, L.164, R.165, E.166, L.283, L.286, G.315, D.316, E.332, H.333, V.334, A.337, Y.367 Ligands: NAD.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:R.66 Hydrogen bonds: A:G.32, A:G.32, A:V.34, A:A.35, A:K.58, A:E.59, A:R.66, A:K.71, A:I.114, A:I.114, A:G.142, A:E.166, A:D.316, A:E.332, A:V.334, A:Y.367 Water bridges: A:G.33, A:A.36, A:S.57, A:K.58, A:E.113, A:R.165, A:E.166, A:E.166, A:V.317, A:H.333, A:D.335, A:Y.367 Salt bridges: A:R.66, A:R.165 pi-Cation interactions: A:K.58

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 23 residues within 4Å: Chain A: F.151, V.188, G.189, G.190, G.191, Y.192, I.193, E.196, V.211, F.212, P.213, E.214, P.219, R.220, V.246, G.277, V.278, G.279, E.332, H.333, Y.367, S.368 Ligands: FAD.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.192, A:I.193 Hydrogen bonds: A:R.165, A:G.190, A:Y.192, A:I.193, A:R.220, A:G.277, A:G.279, A:H.333, A:Y.367 Water bridges: A:S.143, A:G.191, A:G.194, A:R.220, A:R.220, A:A.247, A:V.278, A:V.278, A:G.280, A:Y.367, A:R.369 Salt bridges: A:R.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, A.K. et al., Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica. Sci Rep

Release Date

2016-10-12

Peptides

Os09g0567300 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Os09g0567300 protein

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