SMTL ID : 5jda.1

Bacillus cereus CotH kinase plus Mg2+/AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: R.46, G.47, H.75, V.126, Y.143, A.144, I.145, E.170, Y.230, A.231, W.246, D.247 Ligands: MG.4, NA.7 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.46, A:H.75, A:E.170, A:W.246, A:D.247 Water bridges: A:R.46, A:A.48, A:N.77, A:V.126, A:Y.143, A:E.170, A:A.231, A:A.231 Salt bridges: A:R.46 pi-Stacking: A:Y.143, A:Y.143, A:W.246, A:W.246

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: D.280 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.280, H2O.1, H2O.3, H2O.3, H2O.10 MG.3: 2 residues within 4Å: Chain A: H.49, D.247 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.247, H2O.2, H2O.5, H2O.7, H2O.10 MG.4: 4 residues within 4Å: Chain A: R.46, I.50, N.77 Ligands: AMP.1 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: F.204, H.234, N.239 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.234, A:N.239, H2O.1, H2O.5, H2O.7 MG.6: 4 residues within 4Å: Chain A: F.62, Y.63, K.66, K.72 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:F.62, H2O.2, H2O.6, H2O.7, H2O.8

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain A: H.228 Ligands: AMP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.228 Water bridges: A:D.247

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 10 residues within 4Å: Chain A: M.81, D.82, P.83, R.87, D.249, A.250, R.254, D.255, V.256, G.258 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.82, A:D.249 EDO.9: 5 residues within 4Å: Chain A: F.80, M.81, P.83, K.329 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.329 EDO.10: 5 residues within 4Å: Chain A: C.313, E.314, R.317, F.333, D.334 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.317, A:D.334 Water bridges: A:E.314 EDO.11: 10 residues within 4Å: Chain A: S.78, E.79, F.80, D.82, P.83, S.84, L.85, M.326, K.329 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.12: 7 residues within 4Å: Chain A: D.148, S.155, D.158, K.162, T.163, E.164, A.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.158, A:T.163, A:T.163, A:E.164, A:E.164 Water bridges: A:D.158 EDO.13: 7 residues within 4Å: Chain A: F.74, K.104, S.105, Q.106, Q.122, L.123, E.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.122 Water bridges: A:S.105, A:S.105 EDO.14: 4 residues within 4Å: Chain A: F.109, I.116, Q.322, K.327 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.322 EDO.15: 7 residues within 4Å: Chain A: G.253, P.260, L.261, M.339, E.342, Y.343, K.346 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.253, A:L.261, A:K.346 EDO.16: 6 residues within 4Å: Chain A: I.344, N.345, K.346, R.348, K.349, Q.352 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.345, A:R.348, A:R.348, A:K.349 EDO.17: 7 residues within 4Å: Chain A: P.29, A.30, K.31, D.40, I.41, D.42, Y.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.30, A:K.31

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.18: 9 residues within 4Å: Chain A: L.15, K.19, E.54, K.56, Y.58, I.112, Q.115, Q.117, Y.325 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.112 Water bridges: A:K.56, A:K.56, A:Y.58 Salt bridges: A:K.19, A:K.19, A:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, K.B. et al., Phosphorylation of spore coat proteins by a family of atypical protein kinases. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-05-18

Peptides

Spore coat protein H: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spore coat protein H

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