SMTL ID : 5je2.1 (1 other biounit)

Crystal structure of Burkholderia glumae ToxA Y7F mutant with bound S-adenosylhomocysteine (SAH)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: F.9, F.16, R.26, A.49, C.50, G.51, F.54, F.55, D.71, I.72, S.73, M.76, R.96, D.97, V.98, A.113, W.114, Y.118, M.128 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.16 Hydrogen bonds: A:A.49, A:G.51, A:I.72, A:S.73, A:D.97, A:D.97, A:V.98 Water bridges: A:C.50, A:F.55 Salt bridges: A:R.26

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: Q.25, W.114, V.147, V.163, L.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.25 pi-Cation interactions: A:W.114 DMS.3: 2 residues within 4Å: Chain A: L.218, I.223 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 5 residues within 4Å: Chain A: Q.21, S.22, V.182, T.183, D.184 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenwick, M.K. et al., Burkholderia glumae ToxA Is a Dual-Specificity Methyltransferase That Catalyzes the Last Two Steps of Toxoflavin Biosynthesis. Biochemistry (2016)

Release Date

2016-05-11

Peptides

Methyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyl transferase

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