SMTL ID : 5je6.1

Crystal structure of Burkholderia glumae ToxA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.96, D.97, N.100, M.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.97 Water bridges: A:N.100 EDO.2: 7 residues within 4Å: Chain A: W.114, N.117, Y.118, F.181, F.191 Chain B: D.184, P.185 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.117 Water bridges: B:D.184, B:D.184 EDO.4: 7 residues within 4Å: Chain A: D.184, P.185 Chain B: W.114, N.117, Y.118, F.189, F.191 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.117, B:Y.118 Water bridges: A:D.184, A:D.184, A:D.184, A:D.184 EDO.5: 2 residues within 4Å: Chain B: E.168, Y.175 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.168, B:E.168 Water bridges: B:A.170

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain B: A.170, W.171, G.172 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.172, B:G.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenwick, M.K. et al., Burkholderia glumae ToxA Is a Dual-Specificity Methyltransferase That Catalyzes the Last Two Steps of Toxoflavin Biosynthesis. Biochemistry (2016)

Release Date

2016-05-11

Peptides

Methyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyl transferase

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