SMTL ID : 5jey.1

Crystal structure of type 2 PDF from Streptococcus agalactiae, crystallized in cacodylate buffer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

8 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: Q.77, C.131, H.174, H.178 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.174, A:H.178, H2O.1 NI.2: 2 residues within 4Å: Chain A: Q.51, H.55 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.55, H2O.4 NI.3: 1 residues within 4Å: Chain A: H.118 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.118, H2O.2 NI.4: 2 residues within 4Å: Chain A: D.94, N.98 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.94 NI.5: 1 residues within 4Å: Chain A: E.158 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.158, A:E.158 NI.6: 3 residues within 4Å: Chain A: H.12, D.15, D.18 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.12, A:D.18, H2O.1, H2O.3, H2O.4 NI.7: 3 residues within 4Å: Chain A: E.43, E.47, K.155 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.43, A:E.47, H2O.2 NI.8: 3 residues within 4Å: Chain A: E.151, K.159, R.161 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.151, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fieulaine, S. et al., A unique peptide deformylase platform to rationally design and challenge novel active compounds. Sci Rep (2016)

Release Date

2016-11-30

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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