- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x 1VU: propionyl Coenzyme A(Non-covalent)
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.2: 5 residues within 4Å:- Chain A: R.411, D.435, D.438, L.439, E.442
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.411, A:R.411
- Water bridges: A:D.435
1PE.4: 5 residues within 4Å:- Chain B: R.411, D.435, D.438, L.439, E.442
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.411, B:R.411, B:E.442
- Water bridges: B:E.442
1PE.5: 5 residues within 4Å:- Chain B: D.125, N.129, K.240, A.243, L.244
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.125, B:K.240
- Water bridges: B:K.240
1PE.7: 5 residues within 4Å:- Chain C: R.411, D.435, D.438, L.439, E.442
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.411, C:R.411
- Water bridges: C:D.438, C:D.438
1PE.8: 4 residues within 4Å:- Chain C: D.125, N.129, K.240, A.243
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.240
- Water bridges: C:D.125, C:K.240
1PE.10: 5 residues within 4Å:- Chain D: R.411, D.435, D.438, L.439, E.442
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.411, D:R.411
1PE.11: 6 residues within 4Å:- Chain D: D.125, N.129, Q.239, K.240, A.243, L.244
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:D.125, D:K.240
- Water bridges: D:K.240
- 3 x COA: COENZYME A(Non-covalent)(Covalent)
COA.3: 24 residues within 4Å:- Chain B: M.146, I.194, T.195, P.196, T.197, T.198, N.199, S.221, P.222, H.223, R.225, S.258, I.259, T.262, T.277, G.278, G.279, A.281, I.282, X.330, T.380, V.383, M.421, F.493
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:T.380
- Hydrogen bonds: B:T.195, B:T.195, B:T.198, B:T.262, B:T.277
- Water bridges: B:N.199, B:R.225, B:R.225, B:I.282, B:T.380
- Salt bridges: B:H.223, B:R.225
- pi-Stacking: B:H.223
COA.6: 20 residues within 4Å:- Chain C: M.146, I.194, T.195, P.196, T.197, T.198, N.199, S.221, P.222, H.223, R.225, I.259, T.262, T.277, G.278, G.279, X.330, T.380, M.421, F.493
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:T.197, C:T.198
- Hydrogen bonds: C:T.195, C:T.197, C:T.198, C:T.198, C:S.221, C:H.223, C:T.380
- Water bridges: C:A.281, C:A.281, C:I.282
- Salt bridges: C:H.223, C:R.225
- pi-Stacking: C:H.223, C:H.223
COA.9: 23 residues within 4Å:- Chain D: M.146, I.194, T.195, P.196, T.197, T.198, N.199, S.221, P.222, H.223, P.224, R.225, S.258, I.259, T.262, T.277, G.278, G.279, I.282, X.330, T.380, M.421, F.493
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:T.195, D:T.195, D:T.198, D:T.380
- Water bridges: D:T.198, D:I.282
- Salt bridges: D:H.223
- pi-Stacking: D:H.223, D:H.223
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zarzycki, J. et al., In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment. Sci Rep (2017)
- Release Date
- 2017-03-01
- Peptides
- Aldehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x 1VU: propionyl Coenzyme A(Non-covalent)
- 7 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 3 x COA: COENZYME A(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zarzycki, J. et al., In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment. Sci Rep (2017)
- Release Date
- 2017-03-01
- Peptides
- Aldehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D