SMTL ID : 5jgu.1

Spin-Labeled T4 Lysozyme Construct R119V1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.126, A:D.127, A:E.128, A:E.128, A:E.128, A:E.128 Water bridges: A:D.127

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: T.142, P.143, N.144, R.145 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: N.132, K.135 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: K.135, S.136 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.3: 2 residues within 4Å: Chain A: E.11, Y.18 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.11, A:Y.18, H2O.2, H2O.5, H2O.7

1 x V1A: S-(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-imidazol-4-yl) methanesulfonothioate(Non-covalent)

V1A.6: 3 residues within 4Å: Chain A: C.119, Q.122, Q.123 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balo, A.R. et al., Toward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains. Biochemistry (2016)

Release Date

2017-02-15

Peptides

Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin