SMTL ID : 5jgz.1

Spin-Labeled T4 Lysozyme Construct T151V1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: N.132, K.135 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.2: 2 residues within 4Å: Chain A: E.11, Y.18 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.11, A:E.11, H2O.4, H2O.5, H2O.8

1 x V1A: S-(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-imidazol-4-yl) methanesulfonothioate(Non-covalent)

V1A.3: 4 residues within 4Å: Chain A: C.151, R.154, T.155, D.159 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.155, A:D.159

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.126, A:D.127, A:E.128, A:E.128, A:E.128 Water bridges: A:D.127

2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.5: 3 residues within 4Å: Chain A: I.50, G.51, R.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.52 Water bridges: A:E.62 HEZ.6: 9 residues within 4Å: Chain A: G.30, H.31, L.32, D.70, A.73, V.103, F.104, G.107, E.108 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.70, A:A.73 Hydrogen bonds: A:G.30, A:L.32, A:E.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balo, A.R. et al., Toward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains. Biochemistry (2016)

Release Date

2017-02-15

Peptides

Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin

Related Entries With Identical Sequence