SMTL ID : 5jib.1

Crystal structure of the Thermotoga maritima acetyl esterase (TM0077) complex with a substrate analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-hexamer

Ligands

6 x OIA: [(3S)-2-oxo-2,3-dihydro-1H-indol-3-yl]acetic acid(Non-covalent)

OIA.1: 7 residues within 4Å: Chain A: G.103, Y.104, S.200, Q.201, H.239, P.240, H.315 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.104, A:Y.104, A:P.240 Hydrogen bonds: A:Y.104, A:S.200, A:Q.201 Salt bridges: A:H.315 OIA.2: 7 residues within 4Å: Chain B: G.103, Y.104, S.200, Q.201, H.239, P.240, H.315 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.104, B:P.240 Hydrogen bonds: B:Y.104, B:S.200, B:Q.201, B:H.315 Salt bridges: B:H.315 OIA.3: 6 residues within 4Å: Chain C: G.103, Y.104, S.200, Q.201, H.239, H.315 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.104 Hydrogen bonds: C:Y.104, C:S.200, C:Q.201, C:H.315 Salt bridges: C:H.315 OIA.4: 7 residues within 4Å: Chain D: G.103, Y.104, S.200, Q.201, H.239, P.240, H.315 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.104, D:Y.104, D:P.240 Hydrogen bonds: D:Y.104, D:S.200, D:Q.201, D:H.315 Salt bridges: D:H.315 OIA.5: 7 residues within 4Å: Chain E: G.103, Y.104, S.200, Q.201, H.239, P.240, H.315 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:Y.104, E:Y.104, E:P.240 Hydrogen bonds: E:Y.104, E:S.200, E:Q.201 Salt bridges: E:H.315 OIA.6: 7 residues within 4Å: Chain F: G.103, Y.104, S.200, Q.201, H.239, P.240, H.315 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:Y.104, F:Y.104, F:P.240 Hydrogen bonds: F:Y.104, F:S.200, F:Q.201, F:H.315 Salt bridges: F:H.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, M.K. et al., Crystal structure of Thermotoga maritima acetyl esterase complex with a substrate analog: Insights into the distinctive substrate specificity in the CE7 carbohydrate esterase family. Biochem. Biophys. Res. Commun. (2016)

Release Date

2017-03-01

Peptides

Cephalosporin-C deacetylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Cephalosporin-C deacetylase

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