SMTL ID : 5jir.2 (2 other biounits)

Crystal structure of Treponema pallidum protein Tp0624

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: D.67, K.80, F.122, F.170, K.184 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.67, A:D.67, A:F.122, A:K.172, A:K.184 Water bridges: A:N.70, A:K.184 GOL.2: 7 residues within 4Å: Chain A: V.156, H.157, E.159, F.226, G.227, Q.228, R.302 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.157, A:E.159, A:G.227, A:R.302 GOL.3: 8 residues within 4Å: Chain A: W.18, L.115, A.119, C.168, L.169, G.196, V.198, Y.200 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.18

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: T.354, A.355, R.370, R.412 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: L.31, R.37, L.38, R.105 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.359, P.360, Q.361 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, M.L. et al., The Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains. Plos One (2016)

Release Date

2016-11-23

Peptides

OOP family OmpA-OmpF porin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OOP family OmpA-OmpF porin

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