SMTL ID : 5jiz.1

PKG II's Carboxyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with 8-pCPT-cGMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x 6FW: 2-amino-8-[(4-chlorophenyl)sulfanyl]-9-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-3,9-dihydro-6H-purin-6-one(Non-covalent)

6FW.1: 22 residues within 4Å: Chain A: I.48, V.67, Q.69, I.80, K.81, L.83, Y.88, F.89, G.90, E.91, K.92, A.93, R.100, S.101, A.102, I.104, L.135, Y.138, L.142, D.145, D.146, R.149 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.88, A:Y.138, A:L.142, A:L.142 Hydrogen bonds: A:Q.69, A:G.90, A:E.91, A:K.92, A:A.93, A:S.101, A:S.101, A:S.101, A:S.101, A:R.149, A:R.149 Water bridges: A:D.145 Salt bridges: A:R.100, A:D.146 6FW.2: 4 residues within 4Å: Chain A: K.133, E.136, G.137, A.140 No protein-ligand interaction detected (PLIP)

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 9 residues within 4Å: Chain A: Q.10, Y.11, F.14, V.38, Y.40, A.61, K.62, A.112, L.114 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.11, A:A.61 Hydrogen bonds: A:Y.11 MPD.4: 7 residues within 4Å: Chain A: I.95, F.121, N.122, G.126, T.127, Q.132, E.136 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.122, A:Q.132 Hydrogen bonds: A:Q.132 Water bridges: A:E.136

1 x CA: CALCIUM ION(Non-functional Binders)

CA.5: 1 residues within 4Å: Chain A: D.34 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, J.C. et al., PKG II's Carboxyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with 8-pCPT-cGMP. To Be Published

Release Date

2017-05-03

Peptides

cGMP-dependent protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-dependent protein kinase 2

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