SMTL ID : 5jj2.1

Crystal structure of the central domain of human AKAP18 gamma/delta in complex with malonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

6 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 7 residues within 4Å: Chain A: H.52, T.54, V.103, R.139, H.144, T.146 Ligands: MLI.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.146, A:T.146 Water bridges: A:T.54, A:T.54, A:R.139, A:R.139, A:K.149 Salt bridges: A:H.52, A:R.139, A:H.144, A:H.144, A:K.149 MLI.2: 8 residues within 4Å: Chain A: F.13, H.52, T.54, M.190, Y.200 Ligands: MLI.1, MLI.3, MLI.5 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.52, A:K.149 MLI.3: 8 residues within 4Å: Chain A: V.46, S.47, S.50, K.149, K.152, K.194, Y.200 Ligands: MLI.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.47, A:S.50, A:Y.200 Water bridges: A:S.47 Salt bridges: A:K.149, A:K.152, A:K.152, A:K.194, A:K.194 MLI.4: 2 residues within 4Å: Chain A: N.11, L.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.11 Water bridges: A:L.191 MLI.5: 2 residues within 4Å: Chain A: S.151 Ligands: MLI.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.151, A:S.151 MLI.6: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjerregaard-Andersen, K. et al., Malonate in the nucleotide-binding site traps human AKAP18 gamma / delta in a novel conformational state. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-08-03

Peptides

A-kinase anchor protein 7 isoform gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A-kinase anchor protein 7 isoform gamma