SMTL ID : 5jj4.1 (2 other biounits)

Crystal Structure of a Variant Human Activation-induced Deoxycytidine Deaminase as an MBP fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.12, D.14, K.15, K.42, E.44, E.45, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, Y.341, R.344 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.42, A:E.44, A:R.344

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.419, C.450, C.453 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.419, A:C.450, A:C.453, H2O.1

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: Q.325, G.327 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:Q.325, A:G.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pham, P. et al., Structural analysis of the activation-induced deoxycytidine deaminase required in immunoglobulin diversification. DNA Repair (Amst.) (2016)

Release Date

2016-06-29

Peptides

Maltose-binding periplasmic protein,Single-stranded DNA cytosine deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Maltose-binding periplasmic protein,Single-stranded DNA cytosine deaminase

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