SMTL ID : 5jjd.1

crystal structure of the ceramide transfer protein PH and START domain complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 11 residues within 4Å: Chain B: Q.115, H.117, R.126, V.128, A.169, I.171, V.173, V.205, P.207, L.216 Ligands: PGE.4 No protein-ligand interaction detected (PLIP) PEG.2: 10 residues within 4Å: Chain A: D.76, V.78, Y.80 Chain B: L.180, V.181, S.182, D.193, N.194, I.195, L.196 No protein-ligand interaction detected (PLIP) PEG.3: 6 residues within 4Å: Chain B: N.82, W.85, N.86, D.108, N.109, I.134 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.82

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 14 residues within 4Å: Chain B: F.84, R.90, W.93, E.94, I.97, Q.115, Y.130, N.152, I.171, V.173, Y.201, Y.224, F.227 Ligands: PEG.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prashek, J. et al., Interaction between the PH and START domains of ceramide transfer protein competes with phosphatidylinositol 4-phosphate binding by the PH domain. J. Biol. Chem. (2017)

Release Date

2017-07-05

Peptides

Collagen type IV alpha-3-binding protein: A
Collagen type IV alpha-3-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Collagen type IV alpha-3-binding protein

Collagen type IV alpha-3-binding protein