SMTL ID : 5jjg.1

Structure of magnesium-loaded ALG-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.14, D.16, S.18, V.20, E.25 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.14, A:S.18, A:V.20, A:E.25, H2O.1 MG.2: 4 residues within 4Å: Chain A: D.81, D.83, S.85, M.87 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.81, A:D.83, A:S.85, A:M.87, H2O.2, H2O.2 MG.3: 4 residues within 4Å: Chain A: D.147, D.149, D.151, W.153 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.147, A:D.149, A:D.151, A:W.153, H2O.2, H2O.3 MG.7: 5 residues within 4Å: Chain B: D.14, D.16, S.18, V.20, E.25 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.14, B:S.18, B:V.20, B:E.25, H2O.5 MG.8: 4 residues within 4Å: Chain B: D.81, D.83, S.85, M.87 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.81, B:D.83, B:S.85, B:M.87, H2O.6, H2O.6 MG.9: 4 residues within 4Å: Chain B: D.147, D.149, D.151, W.153 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.147, B:D.149, B:D.151, B:W.153, H2O.6, H2O.7

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 6 residues within 4Å: Chain A: L.93, I.124, D.128, F.129, G.132, C.133 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.93, A:I.124 Hydrogen bonds: A:F.129 IPA.5: 2 residues within 4Å: Chain A: Y.158 Chain B: R.144 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:R.144 IPA.6: 5 residues within 4Å: Chain A: W.73, F.100, Y.102, C.133, Q.137 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.73, A:F.100, A:Q.137 Hydrogen bonds: A:C.133 IPA.10: 6 residues within 4Å: Chain B: L.93, I.124, D.128, F.129, G.132, C.133 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.93, B:I.124 Hydrogen bonds: B:F.129 IPA.11: 2 residues within 4Å: Chain A: R.144 Chain B: Y.158 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.144 IPA.12: 5 residues within 4Å: Chain B: W.73, F.100, Y.102, C.133, Q.137 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.73, B:F.100, B:Q.137 Hydrogen bonds: B:C.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanner, J.J. et al., EF5 Is the High-Affinity Mg(2+) Site in ALG-2. Biochemistry (2016)

Release Date

2016-09-07

Peptides

Pcalcium-binding protein ALG-2, rogrammed cell death protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pcalcium-binding protein ALG-2, rogrammed cell death protein 6