SMTL ID : 5jjq.1 (3 other biounits)

Crystal structure of IdnL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 6L1: 5'-O-[(R)-{[(3S)-3-aminobutanoyl]oxy}(hydroxy)phosphoryl]adenosine(Non-covalent)

6L1.1: 17 residues within 4Å: Chain A: D.236, S.309, G.310, E.311, P.312, N.332, C.333, F.334, G.335, S.336, T.337, V.340, D.428, F.440, R.443, K.449, R.454 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:D.236, A:G.310, A:C.333, A:G.335, A:S.336, A:T.337, A:T.337, A:V.340, A:D.428, A:R.443, A:K.449 Water bridges: A:S.336 Salt bridges: A:K.449, A:K.449, A:R.454 pi-Stacking: A:F.440

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: H.362, A.363, M.369, R.432, L.438 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cieslak, J. et al., Biochemical characterization and structural insight into aliphatic beta-amino acid adenylation enzymes IdnL1 and CmiS6. Proteins (2017)

Release Date

2017-03-22

Peptides

AMP-dependent synthetase and ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AMP-dependent synthetase and ligase

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