SMTL ID : 5jle.1

Crystal structure of SETD2 bound to SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.67, C.69, C.84, C.88 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.69, A:C.84, A:C.88 ZN.2: 5 residues within 4Å: Chain A: C.84, C.97, C.101, C.107 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.84, A:C.97, A:C.101, A:C.107 ZN.3: 4 residues within 4Å: Chain A: C.199, C.246, C.248, C.253 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.199, A:C.246, A:C.248, A:C.253

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.4: 19 residues within 4Å: Chain A: K.128, G.129, W.130, I.170, H.171, Y.172, Y.173, R.193, F.194, M.195, N.196, H.197, Y.234, Q.244, K.245, C.246, F.247, C.248, L.257 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:W.130, A:W.130, A:W.130, A:Y.172, A:N.196, A:H.197, A:H.197, A:Q.244, A:Q.244, A:F.247 Salt bridges: A:H.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase. Genes Dev. (2016)

Release Date

2016-11-02

Peptides

Histone-lysine N-methyltransferase SETD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase SETD2

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