SMTL ID : 5jlp.1

Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: R.89 No protein-ligand interaction detected (PLIP) EDO.5: 1 residues within 4Å: Chain B: R.89 No protein-ligand interaction detected (PLIP)

2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 3 residues within 4Å: Chain A: Y.289, V.290, E.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.290 PG0.6: 3 residues within 4Å: Chain B: Y.289, V.290, E.322 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.290

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.183, D.185, D.339, G.340, D.343 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.183, A:D.339, A:D.343, H2O.1 MG.7: 5 residues within 4Å: Chain B: D.183, D.185, D.339, G.340, D.343 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.183, B:D.339, B:D.343, H2O.2

2 x SER: SERINE(Non-covalent)

SER.4: 8 residues within 4Å: Chain A: D.13, Q.14, G.16, T.18, Q.37, V.39 Chain B: N.121, I.122 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.13, A:Q.14, A:G.16, A:V.17, A:T.18, A:T.18, A:Q.37, B:I.122 SER.8: 8 residues within 4Å: Chain A: N.121, I.122 Chain B: D.13, Q.14, G.16, T.18, Q.37, V.39 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.13, B:Q.14, B:G.16, B:V.17, B:T.18, B:T.18, B:Q.37, A:I.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shree, S. et al., Crystal structure of Mycobacterium avium SerB2 in complex with serine at ACT domain. To be published

Release Date

2017-05-03

Peptides

Phosphoserine phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphoserine phosphatase

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