SMTL ID : 5jlr.1

Crystal structure of Mycobacterium avium SerB2 with serine present at slightly different position near ACT domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.183, D.185, D.339 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.183, A:D.185, A:D.339, H2O.1, H2O.2, H2O.2 MG.5: 3 residues within 4Å: Chain B: D.183, D.185, D.339 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.183, B:D.185, B:D.339, H2O.4, H2O.5, H2O.5

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.228, G.272, G.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.228, A:R.228 EDO.6: 3 residues within 4Å: Chain B: R.228, G.272, G.273 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.228, B:R.228

2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.3: 4 residues within 4Å: Chain A: V.38, I.125, R.126 Chain B: L.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.126 PG0.7: 4 residues within 4Å: Chain A: L.124 Chain B: V.38, I.125, R.126 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.126

2 x SER: SERINE(Non-covalent)

SER.4: 8 residues within 4Å: Chain A: D.13, Q.14, G.16, V.17, T.18, V.39 Chain B: N.121, I.122 11 PLIP interactions: 1 Ligand-Ligand interactions, 7 interactions with chain A, 3 interactions with chain B Hydrogen bonds: S.4, A:D.13, A:G.16, A:V.17, A:T.18, A:T.18, A:T.18, A:T.18, B:I.122 Water bridges: B:N.121, B:N.121 SER.8: 8 residues within 4Å: Chain A: N.121, I.122 Chain B: D.13, Q.14, G.16, V.17, T.18, V.39 11 PLIP interactions: 3 interactions with chain A, 7 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: A:I.122, B:D.13, B:G.16, B:V.17, B:T.18, B:T.18, B:T.18, B:T.18, S.8 Water bridges: A:N.121, A:N.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shree, S. et al., Crystal structure of Mycobacterium avium SerB2 with serine present at slightly different position near ACT domain. To be published

Release Date

2017-05-03

Peptides

Phosphoserine phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphoserine phosphatase

Related Entries With Identical Sequence