SMTL ID : 5jmf.1

Heparinase III-BT4657 gene product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: N.400, S.401, D.405 9 PLIP interactions: 9 interactions with chain A Water bridges: A:N.400, A:N.400, A:N.400, A:N.400, A:N.400, A:S.401, A:S.401, A:D.405, A:D.405

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: K.350, D.376, M.404 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.376, A:M.404

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: Q.422, D.440, H.465 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.440, A:H.465, H2O.3, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulaganathan, T. et al., Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III from Bacteroides thetaiotaomicron (BT4657). Glycobiology (2017)

Release Date

2016-05-25

Peptides

Heparinase III protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heparinase III protein

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