SMTL ID : 5jmy.2 (1 other biounit)

NEPRILYSIN COMPLEXED WITH LBQ657

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: V.571, Y.572, G.575, N.576 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.93, S.95, A.96, R.100, D.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.93, A:R.100 NAG.3: 3 residues within 4Å: Chain A: N.273, N.276, E.277 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.276 Hydrogen bonds: A:K.267, A:K.267, A:N.273, A:E.277, A:E.277 Water bridges: A:K.134 NAG.4: 2 residues within 4Å: Chain A: N.233, K.302 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.233, A:N.233, A:N.233

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.532, H.536, E.595, H.660 Ligands: 6LD.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.532, A:H.536, A:E.595, A:E.595

1 x 6LD: Sacubitrilat(Non-covalent)

6LD.6: 20 residues within 4Å: Chain A: R.51, F.55, R.59, N.491, A.492, F.493, M.528, V.529, H.532, E.533, H.536, E.595, D.599, F.638, V.641, W.642, H.660, R.666, I.667 Ligands: ZN.5 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.55, A:F.493, A:V.529, A:F.638, A:F.638, A:V.641, A:V.641, A:W.642, A:W.642, A:I.667 Hydrogen bonds: A:N.491, A:R.666, A:R.666 Water bridges: A:R.51 Salt bridges: A:R.51, A:R.59, A:H.532, A:H.536, A:H.660, A:H.660 pi-Stacking: A:H.532, A:W.642

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiering, N. et al., Structure of neprilysin in complex with the active metabolite of sacubitril. Sci Rep (2016)

Release Date

2016-06-15

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neprilysin

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