- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.49 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: N.170, K.171, S.172
- Chain B: Q.93, Q.101
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.172, B:Q.101, B:Q.101
EDO.4: 7 residues within 4Å:- Chain A: K.107, F.278, R.280, S.281
- Chain F: V.8, Q.9, Q.10
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain F- Hydrogen bonds: A:K.107, A:R.280, A:S.281, F:Q.9, F:Q.10
EDO.5: 9 residues within 4Å:- Chain A: G.51, N.55, A.133, N.136, T.137, L.140, Y.177
- Chain F: T.1, L.2
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain A- Hydrogen bonds: F:L.2, A:N.55, A:N.136, A:T.137
EDO.7: 5 residues within 4Å:- Chain B: V.83, N.86
- Chain F: V.8, S.12, F.14
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain F- Hydrogen bonds: B:N.86, F:S.12, F:S.12
EDO.8: 9 residues within 4Å:- Chain B: G.51, N.55, A.133, N.136, T.137, L.140, Y.177
- Chain E: T.1, L.2
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:G.51, B:N.55, B:N.136, B:T.137, E:L.2
EDO.9: 7 residues within 4Å:- Chain B: K.107, F.278, R.280, S.281
- Chain E: V.8, Q.9, Q.10
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain E- Hydrogen bonds: B:K.107, B:S.281, E:Q.9, E:Q.10, E:Q.10
EDO.12: 7 residues within 4Å:- Chain C: G.51, N.55, A.133, N.136, T.137, L.140
- Ligands: EDO.13
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.51, C:N.55, C:A.133
- Water bridges: C:N.136
EDO.13: 8 residues within 4Å:- Chain C: S.52, N.55, K.158, S.176, Y.177, V.180
- Ligands: SO4.11, EDO.12
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.55, C:K.158, C:K.158
EDO.15: 5 residues within 4Å:- Chain D: G.51, N.55, N.136, T.137, Y.177
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.55, D:N.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakel, K. et al., Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity. Rna (2016)
- Release Date
- 2016-06-22
- Peptides
- Poly(A) RNA polymerase gld-2: ABCD
RNP (RRM RNA binding domain) containing: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.49 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakel, K. et al., Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity. Rna (2016)
- Release Date
- 2016-06-22
- Peptides
- Poly(A) RNA polymerase gld-2: ABCD
RNP (RRM RNA binding domain) containing: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H