SMTL ID : 5jnq.1

MraY tunicamycin complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x TUM: Tunicamycin(Non-covalent)

TUM.1: 17 residues within 4Å: Chain A: K.130, K.144, N.205, F.206, D.208, G.209, L.210, D.211, N.254, F.261, G.263, D.264, V.301, A.320, P.321, H.323, H.324 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.144, A:V.301 Hydrogen bonds: A:K.130, A:K.130, A:K.144, A:K.144, A:N.205, A:D.208, A:D.208, A:D.211, A:N.254, A:H.324 Water bridges: A:G.209 pi-Stacking: A:F.261 TUM.5: 17 residues within 4Å: Chain B: K.130, K.144, N.205, F.206, D.208, G.209, L.210, D.211, N.254, F.261, G.263, D.264, V.301, A.320, P.321, H.323, H.324 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:K.144, B:V.301 Hydrogen bonds: B:K.130, B:K.130, B:K.144, B:K.144, B:N.205, B:D.208, B:D.208, B:D.211, B:D.211, B:N.254, B:H.324 Water bridges: B:G.209 pi-Stacking: B:F.261

4 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 8 residues within 4Å: Chain A: L.220, I.227, A.341, C.348, M.349 Chain B: L.248 Ligands: PLM.6, BOG.8 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.248, A:L.220, A:I.227, A:A.341 PLM.3: 1 residues within 4Å: Chain A: F.326 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.326 PLM.6: 8 residues within 4Å: Chain A: L.248 Chain B: L.220, I.227, A.341, C.348, M.349 Ligands: PLM.2, BOG.4 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.220, B:I.227, B:A.341, A:L.248 PLM.7: 1 residues within 4Å: Chain B: F.326 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.326

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.4: 8 residues within 4Å: Chain A: F.31, I.230, G.231 Chain B: N.28, I.227, Y.352 Ligands: PLM.6, BOG.8 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.230, B:I.227, B:Y.352 Hydrogen bonds: B:N.28 BOG.8: 8 residues within 4Å: Chain A: N.28, I.227, Y.352 Chain B: F.31, I.230, G.231 Ligands: PLM.2, BOG.4 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.227, A:Y.352, B:I.230 Hydrogen bonds: A:N.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hakulinen, J.K. et al., MraY-antibiotic complex reveals details of tunicamycin mode of action. Nat. Chem. Biol. (2017)

Release Date

2017-01-11

Peptides

Phospho-N-acetylmuramoyl-pentapeptide-transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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Phospho-N-acetylmuramoyl-pentapeptide-transferase