SMTL ID : 5jod.2 (1 other biounit)

Structure of proplasmepsin IV from Plasmodium falciparum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: P.228, N.311, K.312 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.312 Water bridges: A:P.228, A:K.312, A:Y.356, A:V.371 GOL.2: 4 residues within 4Å: Chain A: K.8, D.209, H.211, V.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.209 Water bridges: A:I.9, A:I.9 GOL.3: 3 residues within 4Å: Chain A: D.10, F.63, E.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.10 GOL.4: 4 residues within 4Å: Chain A: T.4, Y.204, Y.214, L.375 No protein-ligand interaction detected (PLIP) GOL.5: 5 residues within 4Å: Chain A: E.226, V.371, A.372, K.373, N.374 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.372, A:N.374 Water bridges: A:A.372 GOL.6: 8 residues within 4Å: Chain A: K.1, H.2, T.3, D.142, L.143, K.195, I.196, I.217 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.3, A:D.142, A:I.217 Water bridges: A:K.195, A:I.196, A:D.197, A:D.197 GOL.7: 5 residues within 4Å: Chain B: E.226, A.372, K.373, N.374, L.375 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.374, B:L.375 GOL.8: 8 residues within 4Å: Chain B: P.12, H.13, V.58, S.265, T.266, P.290, M.333, L.337 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.13, B:H.13, B:V.58, B:S.265, B:P.290 GOL.9: 3 residues within 4Å: Chain B: Y.204, Y.214, F.224 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Recacha, R. et al., Crystal structure of Plasmodium falciparum proplasmepsin IV: the plasticity of proplasmepsins. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-08-17

Peptides

Proplasmepsin IV: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proplasmepsin IV

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