SMTL ID : 5jow.1 (1 other biounit)

Bacteroides ovatus Xyloglucan PUL GH43A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 10 residues within 4Å: Chain A: D.24, F.41, F.83, A.84, I.129, D.130, E.179, R.273, F.481 Ligands: EDO.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.84, A:D.130, A:E.179, A:R.273, A:R.273 Water bridges: A:H.243

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: F.141, L.152, C.153, E.154, S.164, S.165, K.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.164, A:S.165 EDO.3: 7 residues within 4Å: Chain A: Y.177, E.179, G.198, T.199, E.200 Ligands: TRS.1, EDO.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.179, A:T.199, A:E.200 EDO.4: 6 residues within 4Å: Chain A: E.136, D.137, K.139, F.141, Y.190, I.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.137 Water bridges: A:Y.190 EDO.5: 4 residues within 4Å: Chain A: S.253, P.279, V.280, R.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.280 Water bridges: A:W.254, A:W.254 EDO.6: 2 residues within 4Å: Chain A: K.284, D.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.284, A:D.285 EDO.7: 3 residues within 4Å: Chain A: N.291, N.293, T.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.291 Water bridges: A:T.295, A:S.297 EDO.8: 4 residues within 4Å: Chain A: P.121, V.122, W.123, T.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.121, A:W.123 EDO.9: 5 residues within 4Å: Chain A: R.88, L.133, Y.134, I.183, Y.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.183 Water bridges: A:R.88 EDO.10: 5 residues within 4Å: Chain A: R.168, I.169, D.214, G.215, P.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.214 EDO.11: 5 residues within 4Å: Chain A: E.200, T.475, G.480, F.481 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.200, A:E.200, A:G.480, A:G.480

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hemsworth, G.R. et al., Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut. Open Biology (2016)

Release Date

2016-08-10

Peptides

Non-reducing end alpha-L-arabinofuranosidase BoGH43A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-reducing end alpha-L-arabinofuranosidase BoGH43A

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