SMTL ID : 5jp1.1

Structure of Xanthomonas campestris effector protein XopD bound to tomato SUMO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 4 residues within 4Å: Chain A: K.139, E.163, M.164, P.165 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.139, A:M.164, A:M.164, A:I.166 Salt bridges: A:K.139 MLI.3: 7 residues within 4Å: Chain A: L.35, G.47 Chain B: I.61, A.62, R.69, R.71, H.92 11 PLIP interactions: 1 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.35 Water bridges: B:F.63, B:R.71, B:R.71, B:R.71, B:R.71 Salt bridges: B:R.69, B:R.69, B:R.71, B:R.71, B:H.92

1 x D1D: (4S,5S)-1,2-DITHIANE-4,5-DIOL(Non-covalent)

D1D.2: 1 residues within 4Å: Chain A: Y.145 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pruneda, J.N. et al., The Molecular Basis for Ubiquitin and Ubiquitin-like Specificities in Bacterial Effector Proteases. Mol.Cell (2016)

Release Date

2016-07-27

Peptides

Xanthomonas outer protein D: A
Small ubiquitin-related modifier: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Xanthomonas outer protein D

Small ubiquitin-related modifier

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