SMTL ID : 5jph.1 (2 other biounits)

Structure of a GNAT acetyltransferase SACOL1063 from Staphylococcus aureus in complex with CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

homo-trimer

Ligands

6 x COA: COENZYME A(Non-covalent)

COA.1: 15 residues within 4Å: Chain A: F.25, I.31, S.35, D.38, Y.40, R.60, R.62, I.71, E.72, R.73, V.74, N.108, E.131, E.132 Ligands: COA.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.40, A:Y.40 Hydrogen bonds: A:S.35, A:S.35, A:R.73, A:R.73, A:R.73, A:N.108 Water bridges: A:R.62, A:K.70, A:R.73, A:N.108, A:Q.110, A:H.136, A:H.136 COA.2: 20 residues within 4Å: Chain A: V.24, Q.29, V.74, A.75, V.76, R.81, G.82, Q.83, G.84, M.85, G.86, R.87, A.109, Q.110, H.112, P.115, F.116, Y.117, S.119 Ligands: COA.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.24, A:V.74 Hydrogen bonds: A:Q.29, A:V.74, A:V.76, A:R.81, A:G.82, A:Q.83, A:G.84, A:G.86, A:R.87, A:S.119 Water bridges: A:G.82, A:F.116 COA.4: 17 residues within 4Å: Chain B: F.25, I.31, S.35, D.38, Y.40, R.60, R.62, I.71, E.72, R.73, V.74, M.107, N.108, F.129, E.131, E.132 Ligands: COA.5 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.40, B:Y.40 Hydrogen bonds: B:S.35, B:S.35, B:D.38, B:R.73, B:R.73, B:R.73, B:N.108 Water bridges: B:E.39, B:R.62, B:K.70, B:E.72, B:R.73, B:N.108, B:Q.110, B:H.136, B:H.136 COA.5: 19 residues within 4Å: Chain B: V.24, Q.29, V.74, A.75, V.76, H.80, R.81, G.82, Q.83, G.84, M.85, G.86, R.87, A.109, Q.110, H.112, F.116, Y.117 Ligands: COA.4 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.24, B:V.76 Hydrogen bonds: B:Q.29, B:V.74, B:V.76, B:R.81, B:G.82, B:Q.83, B:G.84, B:G.86, B:R.87 Water bridges: B:G.82, B:R.87, B:R.87, B:H.112, B:S.119, B:S.119, B:S.119, B:S.119 Salt bridges: B:R.87 COA.7: 15 residues within 4Å: Chain C: F.25, I.31, S.35, D.38, Y.40, R.60, R.62, I.71, E.72, R.73, V.74, N.108, E.131, E.132 Ligands: COA.8 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.40, C:Y.40 Hydrogen bonds: C:R.73, C:R.73, C:R.73, C:N.108, C:E.132 Water bridges: C:S.35, C:R.62, C:R.62, C:R.73, C:N.108, C:Q.110, C:H.136, C:H.136 COA.8: 20 residues within 4Å: Chain C: V.24, Q.29, V.74, A.75, V.76, R.81, G.82, Q.83, G.84, M.85, G.86, R.87, A.109, Q.110, H.112, P.115, F.116, Y.117, S.119 Ligands: COA.7 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:V.24, C:V.74 Hydrogen bonds: C:Q.29, C:V.74, C:V.76, C:R.81, C:G.82, C:G.84, C:G.86, C:R.87, C:H.112, C:S.119 Water bridges: C:Q.83, C:H.112

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: C.17, R.21, H.46, T.58, A.59, R.60 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: C.17, R.21, H.46, T.58, A.59, R.60 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain C: C.17, R.21, H.46, T.58, A.59, R.60 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majorek, K.A. et al., Insight into the 3D structure and substrate specificity of previously uncharacterized GNAT superfamily acetyltransferases from pathogenic bacteria. Biochim.Biophys.Acta (2016)

Release Date

2016-06-29

Peptides

Acetyltransferase SACOL1063: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acetyltransferase SACOL1063

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