SMTL ID : 5jpo.1

Complex structure of human elongation factor 1B gamma GST-liked domain and delta N-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-8-2-mer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: W.15, V.109, A.112, S.113, F.117, T.169, W.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.169 Water bridges: A:R.16, A:W.172, A:W.172, A:W.172 GOL.2: 2 residues within 4Å: Chain A: T.150, R.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.150, A:E.157 GOL.3: 5 residues within 4Å: Chain A: Y.9, T.45, F.51, K.54, E.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.9, A:K.54, A:E.64 GOL.4: 7 residues within 4Å: Chain B: W.15, V.109, A.112, S.113, F.117, T.169, W.172 1 PLIP interactions: 1 interactions with chain B Water bridges: B:W.172 GOL.5: 3 residues within 4Å: Chain D: P.187, N.188, R.191 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.188, D:R.191, D:R.191 GOL.6: 7 residues within 4Å: Chain F: W.15, V.109, A.112, S.113, F.117, T.169, W.172 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:T.169 Water bridges: F:R.16, F:W.172, F:W.172, F:W.172 GOL.7: 2 residues within 4Å: Chain F: T.150, R.151 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:T.150, F:E.157, F:E.157 GOL.8: 5 residues within 4Å: Chain F: Y.9, T.45, F.51, K.54, E.64 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:K.54, F:E.64 Water bridges: F:E.64 GOL.9: 7 residues within 4Å: Chain G: W.15, V.109, A.112, S.113, F.117, T.169, W.172 1 PLIP interactions: 1 interactions with chain G Water bridges: G:W.172 GOL.10: 3 residues within 4Å: Chain I: P.187, N.188, R.191 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:R.191, I:R.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, Y.S. et al., Complex structure of human elongation factor 1B gamma GST-liked domain and delta N-terminal domain. To Be Published

Release Date

2017-05-10

Peptides

Elongation factor 1-gamma: ABCDFGHI
Elongation factor 1-delta: EJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

F
A

G
B

H
C

I
D

E
E

J
E

Elongation factor 1-gamma

Elongation factor 1-delta

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