SMTL ID : 5jq2.1

Crystal structure of the Ru(bpy)2PhenA functionalized P450 BM3 L407C heme domain mutant in complex with N-palmitoylglycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.69, L.75, L.86, F.87, W.96, F.107, I.153, F.261, A.264, G.265, T.268, T.269, L.272, T.327, F.331, P.392, F.393, G.394, R.398, A.399, C.400, I.401, G.402, F.405, A.406 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:L.86, A:F.87, A:F.87, A:F.87, A:F.107, A:I.153, A:F.261, A:F.261, A:A.264, A:L.272, A:F.393, A:F.393, A:I.401, A:F.405 Hydrogen bonds: A:R.398 Water bridges: A:K.69, A:K.69, A:S.332, A:S.332, A:S.332, A:N.395, A:R.398 Salt bridges: A:K.69, A:R.398 Metal complexes: A:C.400 HEM.4: 25 residues within 4Å: Chain B: K.69, L.75, L.86, F.87, W.96, F.107, I.153, F.261, A.264, G.265, T.268, T.269, L.272, T.327, F.331, P.392, F.393, G.394, R.398, A.399, C.400, I.401, G.402, F.405, A.406 23 PLIP interactions: 23 interactions with chain B, Hydrophobic interactions: B:L.86, B:F.87, B:F.87, B:F.87, B:F.107, B:I.153, B:F.261, B:F.261, B:A.264, B:L.272, B:F.393, B:I.401, B:F.405 Hydrogen bonds: B:R.398 Water bridges: B:K.69, B:K.69, B:S.332, B:S.332, B:S.332, B:R.398 Salt bridges: B:K.69, B:R.398 Metal complexes: B:C.400

2 x 140: N-PALMITOYLGLYCINE(Non-covalent)

140.2: 13 residues within 4Å: Chain A: L.29, Y.51, S.72, Q.73, A.74, V.78, A.82, F.87, L.188, I.263, A.264, A.328, A.330 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.74, A:V.78, A:A.82, A:F.87, A:I.263, A:A.264, A:A.328, A:A.330 Hydrogen bonds: A:Y.51, A:Q.73, A:A.74 Water bridges: A:R.47, A:Y.51 140.5: 17 residues within 4Å: Chain B: L.20, P.25, V.26, L.29, F.42, R.47, Y.51, A.74, V.78, A.82, F.87, L.181, L.188, I.263, A.328, P.329, L.437 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.29, B:A.74, B:V.78, B:A.82, B:F.87, B:F.87, B:L.181, B:A.328 Hydrogen bonds: B:Y.51, B:Y.51, B:Y.51 Salt bridges: B:R.47

2 x RU8: bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[2-iodo-N-(1,10-phenanthrolin-5-yl-kappa~2~N~1~,N~10~)acetamide]ruthenium(2+)(Covalent)

RU8.3: 9 residues within 4Å: Chain A: K.309, K.312, G.315, M.316, L.318, N.319, F.379, P.382, C.407 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:K.312, A:K.312, A:P.382 Hydrogen bonds: A:N.319 Water bridges: A:Q.403 RU8.6: 9 residues within 4Å: Chain B: K.309, K.312, G.315, M.316, L.318, N.319, F.379, P.382, C.407 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:K.312, B:K.312, B:P.382 Water bridges: B:Q.403, B:T.411

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spradlin, J. et al., Insights into an efficient light-driven hybrid P450 BM3 enzyme from crystallographic, spectroscopic and biochemical studies. Biochim.Biophys.Acta (2016)

Release Date

2016-10-12

Peptides

P450 BM3 L407C heme domain mutant: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

P450 BM3 L407C heme domain mutant

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