SMTL ID : 5jqj.1

Directed evolutionary changes in MBL super family - NDM-1 Round 10 crystal-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.95, H.97, D.99, H.164, C.183 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.95, A:H.97, A:H.164, H2O.6 ZN.2: 5 residues within 4Å: Chain A: D.99, C.183, H.225 Ligands: ZN.1, MES.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.99, A:C.183, A:H.225, H2O.2, H2O.6

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 4 residues within 4Å: Chain A: R.60, N.151, F.152, G.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.151, A:G.153 MES.4: 9 residues within 4Å: Chain A: M.42, H.97, D.99, H.164, R.186, G.194, N.195, H.225 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.195 Water bridges: A:Q.98, A:R.186, A:R.186 Salt bridges: A:D.99, A:R.186, A:H.225

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: E.127, E.198 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.127, A:E.127, A:E.198, A:E.198 MG.6: 1 residues within 4Å: Chain A: D.70 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.70, H2O.1, H2O.3, H2O.5, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baier, F. et al., Enzyme evolvability is contingent on the initial sequence background. To Be Published

Release Date

2017-05-10

Peptides

Metallo-beta-lactamase type 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase type 2

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