SMTL ID : 5jqk.1

The Xray Crystal Structure of P. falciparum Aminopeptidase P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.462, H.525, E.557, E.571 Ligands: MN.2, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.462, A:H.525, A:E.557, A:E.571 MN.2: 7 residues within 4Å: Chain A: F.418, D.451, D.462, T.464, E.571 Ligands: MN.1, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.451, A:D.451, A:D.462, A:E.571 MN.4: 6 residues within 4Å: Chain B: D.462, H.525, E.557, E.571 Ligands: MN.5, PO4.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.462, B:H.525, B:E.557, B:E.571 MN.5: 7 residues within 4Å: Chain B: F.418, D.451, D.462, T.464, E.571 Ligands: MN.4, PO4.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.451, B:D.451, B:D.462, B:D.462, B:E.571

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 9 residues within 4Å: Chain A: F.418, D.451, D.462, H.525, H.534, E.557, E.571 Ligands: MN.1, MN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.451 Salt bridges: A:H.525, A:H.534 PO4.6: 8 residues within 4Å: Chain B: D.451, D.462, H.525, H.534, E.557, E.571 Ligands: MN.4, MN.5 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.525, B:H.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drinkwater, N. et al., Structure and substrate fingerprint of aminopeptidase P from Plasmodium falciparum. Biochem.J. (2016)

Release Date

2016-08-31

Peptides

Peptidase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidase, putative

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